June week4   
*research(ai/bio/nlp-papers/lectrues/projects)  
** incremental methods 

*integrated(research and class)  
** maybe adv train and seq quality measure later  

*class  
** ApplicationsMLs      


* future...research    
** upload zenodo    
** iterative alignment algo  
** paper focus: E-NLP(??description?)    
** Aug focus(B)  
** deep hierarchy    
(future pro+nu)  
** generative benchmark  
(gf+rm+dc--->nucl)
(check nucl with blast--->check real nicl whether sim or not)  
** using drug bank web or db(good for using)  


## eng reading/listening/speaking/writing(paper)  
## math? code? (lecture/assignment/project)


Monday, June 24, 2024

  • research
    ** ㄱㅂㅈㅆㄺ
  • ㄷㅎㅊㅍㄹㅈㅌ
    o

Tuesday, June 25, 2024

  • research
    o

Wednesday, June 26, 2024

  • research
  • course assignments
  • ㄷㅎㅊㅍㄹㅈㅌ
    o

Thursday, June 27, 2024

  • research
  • course assignments
  • ㄷㅎㅊㅍㄹㅈㅌ
    o

Friday, June 28, 2024

  • research
  • course assignments
  • ㄷㅎㅊㅍㄹㅈㅌ
    o

Saturday, June 29, 2024

  • ㄷㅎㅊㅍㄹㅈㅌ
    o

Sunday, June 30, 2024

  • research
    o
June week3   
*research(ai/bio/nlp-papers/lectrues/projects)  
** incremental methods 

*integrated(research and class)  
** maybe adv train and seq quality measure later  

*class  
** ApplicationsMLs      


* future...research    
** upload zenodo    
** iterative alignment algo  
** paper focus: E-NLP(??description?)    
** Aug focus(B)  
** deep hierarchy    
(future pro+nu)  
** generative benchmark  
(gf+rm+dc--->nucl)
(check nucl with blast--->check real nicl whether sim or not)  
** using drug bank web or db(good for using)  


## eng reading/listening/speaking/writing(paper)  
## math? code? (lecture/assignment/project)


Monday, June 17, 2024

  • research
    ** maybe code refine? 관심ㅇㅇㅂㅅㄱㅇㄱ
  • adv
    ** upgrade? no idea to do more..
    o
    ㄷㅎㅊㅍㄹㅈㅌ

Tuesday, June 18, 2024

  • ㄷㅎㅊㅍㄹㅈㅌ
    o

Wednesday, June 19, 2024

  • ㄷㅎㅊㅍㄹㅈㅌ
    o

Thursday, June 20, 2024

  • ㄷㅎㅊㅍㄹㅈㅌ
    o
    ㄱㅈㄱㄷㅈㅉㅇㅈㄷㅈㄱㅇㅅㅂㄳㅂ

Friday, June 21, 2024

  • ㄷㅎㅊㅍㄹㅈㅌ
  • research
    o

Saturday, June 22, 2024

  • ㄷㅎㅊㅍㄹㅈㅌ
  • research
    o

Sunday, June 23, 2024

  • ㄷㅎㅊㅍㄹㅈㅌ
  • research
    o
June week2   
*research(ai/bio/nlp-papers/lectrues/projects)  
** incremental methods .. 언제끝나냐       

*integrated(research and class)..only way I found?  
** robustness of nucl lms(and adv attack?)    
*** target(d2/nt /md? )  

*class  
** RobustDeepLearning(assignment will release this week)       
** ECE303TA    

* future...research    
** upload zenodo    
** iterative alignment algo  
** paper focus: E-NLP(??description?)    
** Aug focus(B)  
** deep hierarchy    
(future pro+nu)  
** generative benchmark  
(gf+rm+dc--->nucl)
(check nucl with blast--->check real nicl whether sim or not)  
** using drug bank web or db(good for using)  


## eng reading/listening/speaking/writing(paper)  
## math? code? (lecture/assignment/project)


Monday, June 10, 2024

  • integarted with class
    ** write first and if have a time, think about far more step
    *** 속종명은 ar에만 test..적용 미정….
  • research
    ** check length of batch
    ** test without max limit
    o
    오늘 다 할 필요는 없음 리소치

Tuesday, June 11, 2024

  • research
    ** todo list
  • integarted with class
    ** writing
    o
    ㅎㅈㄶㄳㄷㄱㄱㄷㅠㅠ

Wednesday, June 12, 2024

  • integrated with class
    ** writing
  • research
    o

Thursday, June 13, 2024

  • integrated with class
    ** adv learn or another way to gen
    o

Friday, June 14, 2024

  • integrated with class
    ** another way to gen: hierar
    *** 젠 쉽지 않을 것 같은데 그냥 검증로직만..?
    o

Saturday, June 15, 2024

  • integrated with class
    ** try gen model
    o

Sunday, June 16, 2024

  • integrated with class
    ** 걍추가는어려웠움..ㅠㅠ 분량제한도있구
    **이전꺼 내는것도 좀 에바같아소..업그레이드해서 도전해봐야할둣
    o
June week2   
*research(ai/bio/nlp-papers/lectrues/projects)  
** incremental methods .. 언제끝나냐       

*integrated(research and class)..only way I found?  
** robustness of nucl lms(and adv attack?)    
*** target(d2/nt /md? )  

*class  
** RobustDeepLearning(assignment will release this week)       
** ECE303TA    

* future...research    
** upload zenodo    
** iterative alignment algo  
** paper focus: E-NLP(??description?)    
** Aug focus(B)  
** deep hierarchy    
(future pro+nu)  
** generative benchmark  
(gf+rm+dc--->nucl)
(check nucl with blast--->check real nicl whether sim or not)  
** using drug bank web or db(good for using)  


## eng reading/listening/speaking/writing(paper)  
## math? code? (lecture/assignment/project)


속종명은 ar에만 test..적용 미정..
일요일에 이것저것 했는데… 훔 남은 해야할일은 똑같다…..

Monday, June 03, 2024

  • research
    ** duplicate check and todo list and scor
    모든result파일서du제거후–>근데du없었음
    plot다시해보자–>필요없음
  • integrated with class
    ** ppt
    ** d2 test…
    o
    r은ㄷㅊㅊㅁㅊㄹ나하자 ㅄㄱㅇㅈㄷㅀㅈㄷㅁㅎㄴㄴㅇㄹㅁㅎㅋㅋ

char/word/bt moti-> char/codon/bt -> synonym/bt more의미있(지킴) -> 이터레티브perform up
future: adv train? use hier?
강의자료 보면 다른 참고문헌 있는데 그거 보면서non-gradient 인 것을 언급할 수 있게 준비해야
그리고 char/codon/bt예시도 만들어야

Tuesday, June 04, 2024

  • research
    ** ref add!
  • integrated with class
    o

sbatch run_merger.sh merge_diamond_astral_scope_result23456789.m8 diamond_astral_scope_result10.m8 merge_diamond_astral_scope_result23456789
sbatch run_merger.sh mmseqs2_astral_scope_result_2.m8 mmseqs2_astral_scope_result_3.m8 merge_mmseqs2_astral_scope_result23.m8
sbatch run_multi_merger.sh blastp_astral_scope_result2.m8 blastp_astral_scope_result3.m8 merge_blastp_astral_scope_result23.m8
sbatch run_merger.sh ../astral_combined/mmseqs2_astral_scope_result_23456789.m8 mmseqs2_astral_scope_result_10.m8 merge_mmseqs_astral_scope_result2345678910.m8
sbatch /ifs/groups/rosenMRIGrp/hty23/iMethods/methods/MMseqs2/build/src/astral_scope/run_merger.sh /ifs/groups/rosenMRIGrp/hty23/iMethods/methods/MMseqs2/build/src/astral_combined/mmseqs2_astral_scope_result_23456789.m8 /ifs/groups/rosenMRIGrp/hty23/iMethods/methods/MMseqs2/build/src/scope/mmseqs2_astral_scope_result_10.m8 merge_mmseqs2_astral_scope_result2345678910.m8

10121723 normal
10121734 BeeGFS

Wednesday, June 05, 2024

  • integrated with class
    o

Thursday, June 06, 2024

  • integrated with class
    o
    ㄲㅇㅠㅠㅠ흑흑

Friday, June 07, 2024

  • integrated with class
    ** think about far more step o

Saturday, June 08, 2024

  • integarted with class
    ** think about far more step and write
    o

Sunday, June 09, 2024

  • TA…
    o
June week1   
*research(ai/bio/nlp-papers/lectrues/projects)  
** incremental methods .. 언제끝나냐       

*integrated(research and class)..only way I found?  
** robustness of nucl lms(and adv attack?)    
*** target(d2/nt /md? )  

*class  
** RobustDeepLearning(assignment will release this week)       
** ECE303TA    

* future...research    
** upload zenodo    
** iterative alignment algo  
** paper focus: E-NLP(??description?)    
** Aug focus(B)  
** deep hierarchy    
(future pro+nu)  
** generative benchmark  
(gf+rm+dc--->nucl)
(check nucl with blast--->check real nicl whether sim or not)  
** using drug bank web or db(good for using)  


## eng reading/listening/speaking/writing(paper)  
## math? code? (lecture/assignment/project)


(May comment: )
안되는 부분… input text->embedding->(여기가 안됨…………..)model

Saturday, June 01, 2024

  • research
    ** duplicate check
  • integrated with class
    ** ppt
    ** veri–>hard attack
    o
    근데 갑자기 생각난건데 백트렌슬레이션 가능할듯..amino 다음에 역전사하면 될 것 같은데
    반복하는거 다른 것들도 해봐야겠다.. 반복 replace

일단 저장해놓자.. 파일 통해 비교해보자 밑에는

그리고 시퀀스들 얼마나 바뀌었나 체킹해야지
그 다음 속종명?

Sunday, June 02, 2024

  • research
    ** duplicate check and todo list and scor
  • integrated with class
    ** ppt
    ** d2 test…
    o
    속종명은 기한 안에 힘들둣… 속종명은 ar에만 적용해야할둣.. ㅠ